dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01886
Location and strand information: 1948241 - 1950853 (+)
Family: 1.B.11.3.7
Protein type: TC
Protein description: Outer membrane usher protein HtrE

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01887
Location and strand information: 1950850 - 1952013 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01888
Location and strand information: 1952010 - 1952813 (+)
Family: null
Protein type: null
Protein description: putative fimbrial chaperone YadV

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01889
Location and strand information: 1952867 - 1954234 (-)
Family: 2.A.1.3.17
Protein type: TC
Protein description: Riboflavin transporter RibZ

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01890
Location and strand information: 1954601 - 1955767 (+)
Family: PL22|PL22_1
Protein type: CAZyme
Protein description: Oligogalacturonate lyase
Protein isoelectric point: 5.3831
Protein molecular weight: 44292.62
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01891
Location and strand information: 1955954 - 1956745 (+)
Family: TrmB
Protein type: TF
Protein description: Pectin degradation repressor protein KdgR

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01892
Location and strand information: 1957131 - 1957982 (+)
Family: null
Protein type: null
Protein description: N-acetylmuramoyl-L-alanine amidase AmiD

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01893
Location and strand information: 1958197 - 1959588 (-)
Family: 2.A.23.1.8
Protein type: TC
Protein description: L-cystine uptake protein TcyP

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01894
Location and strand information: 1959792 - 1960340 (-)
Family: null
Protein type: null
Protein description: Inner membrane protein YdjM

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01895
Location and strand information: 1960838 - 1961548 (-)
Family: 1.B.35.1.1
Protein type: TC
Protein description: Oligogalacturonate-specific porin KdgM

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01896
Location and strand information: 1961846 - 1963138 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Putative ABC transporter substrate-binding protein YesO

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01897
Location and strand information: 1963154 - 1964281 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Trehalose import ATP-binding protein SugC

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01898
Location and strand information: 1964295 - 1965215 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: L-arabinose transport system permease protein AraQ

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01899
Location and strand information: 1965208 - 1966098 (-)
Family: 3.A.1.1.11
Protein type: TC
Protein description: Lactose transport system permease protein LacF

Gene clsuter ID: MGYG000002476_3|CGC16
Gene ID: MGYG000002476_01900
Location and strand information: 1966139 - 1967806 (-)
Family: PL2_2|PL2
Protein type: CAZyme
Protein description: Pectate disaccharide-lyase
Protein isoelectric point: 6.3083
Protein molecular weight: 63685.11
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000002476_01890	PL22_e0\|4.2.2.6	pectin
MGYG000002476_01900	PL2_e0\|4.2.2.9	pectin

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000002476_01886	Outer membrane usher protein HtrE	TC	1948241	1950853	+	1.B.11.3.7
MGYG000002476_01887	hypothetical protein	null	1950850	1952013	+	Fimbrial
MGYG000002476_01888	putative fimbrial chaperone YadV	null	1952010	1952813	+	PapD_N\| PapD_C
MGYG000002476_01889	Riboflavin transporter RibZ	TC	1952867	1954234	-	2.A.1.3.17
MGYG000002476_01890	Oligogalacturonate lyase	CAZyme	1954601	1955767	+	PL22\| PL22_1
MGYG000002476_01891	Pectin degradation repressor protein KdgR	TF	1955954	1956745	+	TrmB
MGYG000002476_01892	N-acetylmuramoyl-L-alanine amidase AmiD	null	1957131	1957982	+	Amidase_2\| PG_binding_1
MGYG000002476_01893	L-cystine uptake protein TcyP	TC	1958197	1959588	-	2.A.23.1.8
MGYG000002476_01894	Inner membrane protein YdjM	null	1959792	1960340	-	YdjM
MGYG000002476_01895	Oligogalacturonate-specific porin KdgM	TC	1960838	1961548	-	1.B.35.1.1
MGYG000002476_01896	Putative ABC transporter substrate-binding protein YesO	TC	1961846	1963138	-	3.A.1.1.11
MGYG000002476_01897	Trehalose import ATP-binding protein SugC	TC	1963154	1964281	-	3.A.1.1.11
MGYG000002476_01898	L-arabinose transport system permease protein AraQ	TC	1964295	1965215	-	3.A.1.1.11
MGYG000002476_01899	Lactose transport system permease protein LacF	TC	1965208	1966098	-	3.A.1.1.11
MGYG000002476_01900	Pectate disaccharide-lyase	CAZyme	1966139	1967806	-	PL2_2\| PL2
Protein ID	Protein Name	Type	Start	End	Strand	Signature